PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500652.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 863aa    MW: 95914.8 Da    PI: 8.7274
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.73.1e-18771851186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +ev++Li +r+++ +r++  k ++ lWee+s+ + + g++rsp qCk+ w++l   y++ik+g+ +r     ++++y++++e
  XP_004500652.1 771 KWKAEEVKKLIGLRSDLRDRFKVVKGRMILWEEISQSLLADGIRRSPAQCKSLWRSLVLTYEEIKNGKDSR-----KNWQYLEDME 851
                     7********************************************************************96.....79*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.102.5E-6673323IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.18E-7274488IPR001279Metallo-beta-lactamase
SMARTSM008491.9E-2386283IPR001279Metallo-beta-lactamase
PfamPF127061.7E-998233IPR001279Metallo-beta-lactamase
PfamPF075213.4E-8429475IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500907.851764828IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-4766827IPR009057Homeodomain-like
CDDcd122037.24E-17770835No hitNo description
PfamPF138372.3E-14770853No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MASLTTSLPL LFHRPKLTTL SVSASALSAS GSDGSNSRAP HKRRRRIEGP RKSMEDSVQR  60
KMEQFYEGTD GPPLRVLPIG GLGEIGMNCM LVGNHDRYIL IDAGIMFPDY DDLGVQKIIP  120
DTTFIRKWSH KIEALVITHG HEDHIGALPW VIPALDSSTP IFASSFTMEL IKKRLKEHGI  180
FLPSRLKIFR TKNKFVAGPF EIEPIRVTHS IPDCCGLVLR CSDGTILHTG DWKIDETPLD  240
GKVFDREGLE ELSKEGVTLM MSDSTNVLSP GRTTSESAVA DALLRHISAS KGRVITTQFA  300
SNLHRIGSVK AAADLTGRKL VFVGMSLRTY LEAAWKDGKA PFDPSTLVKA EDIDAYAPKD  360
LLIVTTGSQA EPRAALNLAS FGSSHAFKLS KEDVVLYSAK VIPGNESRVM EMLNRISEIG  420
STIVMGKNEG LHTSGHAYRG ELEEVLRIVK PQHFLPVHGE YLFLKEHESL GKSTGIRHTA  480
VIKNGEMLGV SHLRNRRVLS NGFISLGKEN LQLKYSDGDK AFGTSNELFI DERLRIALDG  540
IIVISIEIFR PKNLETFAES TLKGKIRITT RCLWLDKGKL LDALYKAAHA ALSSCPVKSP  600
LAHVERTVSE VLRKMVRKYS GKRPEVIAIA IENPGAVLSD EVNKKLSGKS HVGPEISTIR  660
KAVDENRKES QSTTPQIRDD DIDIEGLLPE KDTTASGAEG DLTGSEDTDE FWKPFIASSV  720
EKSIKANNGY VSRKEHKSNL KKDDSEDIEE AKSEEMSNAE PESPKTVRKN KWKAEEVKKL  780
IGLRSDLRDR FKVVKGRMIL WEEISQSLLA DGIRRSPAQC KSLWRSLVLT YEEIKNGKDS  840
RKNWQYLEDM ERILSNDEAP TKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A2e-857454619480RIBONUCLEASE J
5a0t_B2e-857454619480RIBONUCLEASE J
5a0v_A2e-857454619480RIBONUCLEASE J
5a0v_B2e-857454619480RIBONUCLEASE J
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14146KRRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267821e-139AC126782.23 Medicago truncatula clone mth2-14p11, complete sequence.
GenBankCU0120421e-139CU012042.6 M.truncatula DNA sequence from clone MTH2-25G4 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500652.10.0PREDICTED: uncharacterized protein LOC101497952
TrEMBLG7J5I70.0G7J5I7_MEDTR; RNA-metabolising metallo-beta-lactamase
STRINGGLYMA04G37020.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein